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MPQC
3.0.0-alpha
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This is the complete list of members for sc::IntCoorGen, including all inherited members.
| add_bends(const Ref< SetIntCoor > &list, BitArrayLTri &bonds, Molecule &m) (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| add_bonds(const Ref< SetIntCoor > &list, BitArrayLTri &bonds, Molecule &m) (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| add_out(const Ref< SetIntCoor > &list, BitArrayLTri &bonds, Molecule &m) (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| add_tors(const Ref< SetIntCoor > &list, BitArrayLTri &bonds, Molecule &m) (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| adjacency_matrix(const Molecule &mol, double radius_scaling_factor=1.1) | sc::IntCoorGen | static |
| class_desc() const MPQC__NOEXCEPT | sc::DescribedClass | |
| class_name() const | sc::DescribedClass | |
| class_version() const | sc::DescribedClass | |
| connect_subgraphs(const Molecule &mol, BitArrayLTri &adjacency_matrix) | sc::IntCoorGen | protected |
| cos_ijk(Molecule &m, int i, int j, int k) (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| dereference() | sc::RefCount | inline |
| DescribedClass() (defined in sc::DescribedClass) | sc::DescribedClass | |
| DescribedClass(const DescribedClass &) (defined in sc::DescribedClass) | sc::DescribedClass | |
| dir_restore_state(StateIn &si, const char *objectname, const char *keyword=0) (defined in sc::SavableState) | sc::SavableState | static |
| extra_bonds_ (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| find_disconnected_subgraphs(const BitArrayLTri &adjmat) | sc::IntCoorGen | static |
| generate(const Ref< SetIntCoor > &) | sc::IntCoorGen | virtual |
| hterminal(Molecule &m, BitArrayLTri &bonds, int i) (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| identifier() const | sc::RefCount | inline |
| init_constants() (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| IntCoorGen(const Ref< Molecule > &, int nextra=0, int *extra=0) | sc::IntCoorGen | |
| IntCoorGen(const Ref< KeyVal > &) | sc::IntCoorGen | |
| IntCoorGen(StateIn &) (defined in sc::IntCoorGen) | sc::IntCoorGen | |
| key_restore_state(StateIn &si, const char *keyword) | sc::SavableState | static |
| linear_bend_thres_ (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| linear_bends_ (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| linear_lbends_ (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| linear_stors_ (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| linear_tors_ (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| linear_tors_thres_ (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| lock_ptr() const | sc::RefCount | |
| managed() const (defined in sc::RefCount) | sc::RefCount | inline |
| molecule_ (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| nearest_contact(int i, Molecule &m) (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| nextra_bonds_ (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| nreference() const | sc::RefCount | inline |
| operator=(const SavableState &) (defined in sc::SavableState) | sc::SavableState | |
| operator=(const DescribedClass &) (defined in sc::DescribedClass) | sc::DescribedClass | |
| operator=(const RefCount &) (defined in sc::RefCount) | sc::RefCount | inlineprotected |
| print(std::ostream &out=ExEnv::out0()) const | sc::IntCoorGen | virtual |
| radius_scale_factor_ (defined in sc::IntCoorGen) | sc::IntCoorGen | protected |
| ref() | sc::DescribedClass | inline |
| RefCount() (defined in sc::RefCount) | sc::RefCount | inlineprotected |
| RefCount(const RefCount &) (defined in sc::RefCount) | sc::RefCount | inlineprotected |
| reference() | sc::RefCount | inline |
| restore_state(StateIn &si) | sc::SavableState | static |
| SavableState() (defined in sc::SavableState) | sc::SavableState | protected |
| SavableState(const SavableState &) (defined in sc::SavableState) | sc::SavableState | protected |
| SavableState(StateIn &) | sc::SavableState | protected |
| save_data_state(StateOut &) | sc::IntCoorGen | virtual |
| save_object_state(StateOut &) | sc::SavableState | |
| save_state(StateOut &) | sc::SavableState | |
| save_state(SavableState *s, StateOut &) (defined in sc::SavableState) | sc::SavableState | static |
| save_vbase_state(StateOut &) | sc::SavableState | virtual |
| unlock_ptr() const | sc::RefCount | |
| unmanage() | sc::RefCount | inline |
| use_locks(bool inVal) | sc::RefCount | |
| ~DescribedClass() (defined in sc::DescribedClass) | sc::DescribedClass | virtual |
| ~IntCoorGen() (defined in sc::IntCoorGen) | sc::IntCoorGen | |
| ~RefCount() (defined in sc::RefCount) | sc::RefCount | virtual |
| ~SavableState() (defined in sc::SavableState) | sc::SavableState | virtual |